Schedule

We are taking a break in the classes for Cesar Chavez holiday on March 27, 2015. Otherwise the classes are from 10-12 every Friday in the Brain Imaging Center.

• Day 0 : introduction: what is an image?
• Day 1 : introducing Python
• Day 2: images as arrays and plotting
• Day 3: version control / diagnostics
• Day 4: first statistics / version control
• Day 5: convolution and correlation
• Day 6: regression and the general linear model
• Day 7: diagnostics using principal component analysis
• Day 8: 1D interpolation and slice timing
• Day 9: optimization, 2D interpolation and registration
• Day 10: coordinate systems and cross-modality registration
• Day 11: registration between subjects
• Day 12: smoothing and modeling
• Day 13: testing hypotheses with t and F contrasts
• Day 14: random effects, choosing models
• Day 15: statistical inference

Possible extra days

• Using machine learning tools with scikit-learn;
• Introduction to diffusion imaging;
• Introduction to DICOM;
• Data visualization.