Day 10: coordinate systems and cross-modality registration¶

5 / 1 / 2015

Reading¶

Please read the tutorial on coordinate systems at: http://nipy.org/nibabel/coordinate_systems.html

Day¶

Breaking down affines with inverses;
Reslicing EPI / anatomical using coordinate transforms;
Mutual information for cross-modality registration.

Exercises¶

The usual instructions:

cd pna/pna2015
git pull
ipython notebook

There is a web page listing of the exercise files at https://github.com/practical-neuroimaging/pna2015/tree/master/day10